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CodonCode corporation phred in codoncode aligner v5.0.1
Phred In Codoncode Aligner V5.0.1, supplied by CodonCode corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/codoncode+phred/phred+in+codoncode+aligner+v5+0+1/10__3389_slash_fevo__2024__1416418-63-4-6
Average 90 stars, based on 1 article reviews
phred in codoncode aligner v5.0.1 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Screening of IRF6 Variants in Patients Subjected to Genetic Association Studies for Nonsyndromic Cleft Lip/Palate.
Article Snippet: Objective: To screen for interferon regulatory factor 6 (IRF6) pathogenic variants in patients clinically diagnosed with nonsyndromic cleft lip palate (NSCL/P) and establish the proportion of misdiagnosed Van der Woude syndrome (VWS) cases, which could have biased previous NSCL/P case–control association studies.. Design: Retrospective case series.. Setting: Tertiary care children’s hospital.

Article Title: SARS-CoV-2 Variants of Concern: Presumptive Identification via Sanger Sequencing Analysis of the Receptor Binding Domain (RBD) Region of the S Gene.
Article Snippet: The pairwise sequence alignment score was obtained using the ClustalW multiple method using BioEdit software. .. The mutated base quality was analyzed using the Phred quality values, calculated using CodonCode Aligner software, that represent the probability of error for each base call. ..

Article Title: Use of Multiple Displacement Amplification as Pre-polymerase Chain Reaction (Pre-PCR) to amplify genomic DNA of siphonapterids preserved for long periods in scientific collections
Article Snippet: Sequencing was performed in an automatic sequencer (3130 × l APPLIED BIOSYSTEMS). .. The sequences produced were analyzed using the CodonCode Aligner software (Phred algorithm) for the analysis of sequencing quality. .. Additionally, the samples obtained were submitted to the BLASTn tool from the National Center of Biotechnology Information (NCBI) to evaluate sequence similarity.

Article Title: Occurrence and diversity of Sarcocystidae protozoa in muscle and brain tissues of bats from São Paulo state, Brazil
Article Snippet: The sequencing was carried out using 3730 or 3100 DNA Analyzer (Applied Biosystems, USA). .. The contig assembly of the sequences obtained was evaluated with Phred/Phrap/Consed from CodonCode Aligner software ( ; ). .. The identification of the nPCR-18S rDNA final sequences was performed using Basic Local Alignment Search Tool (BLAST) available in the National Center for Biotechnology Information (NCBI; https://blast.ncbi.nlm.nih.gov/ ).

other:

Article Title: Signatures of Demography and Recombination at Coding Genes in Naturally-Distributed Populations of Arabidopsis Lyrata Subsp. Petraea
Article Snippet: Sequences were aligned and checked for quality using CodonCode Phred/Phrap and BioLign version 4.0.6.2 (Tom Hall, http://en.bio-soft.net/dna/BioLign.html ).

Article Title: The diverse and widespread Southern Ocean ophiuroid Amphiura belgicae should be considered a species complex
Article Snippet: Sequences were base-called using Phred in CodonCode Aligner V5.0.1, trimmed and assembled into individual contigs that were checked by eye before multiple alignment using the MUSCLE algorithm (Edgar, 2004).

Article Title: An ancient, Antarctic-specific species complex: large divergences between multiple Antarctic lineages of the tardigrade genus Mesobiotus.
Article Snippet: 5.1.5 (CodonCode Corp., Dedham, MA), where they were base-called and quality assessed using the PHRED function in CodonCode Aligner (Ewing et al., 1998; Ewing and Green, 1998).

Produced:

Article Title: Use of Multiple Displacement Amplification as Pre-polymerase Chain Reaction (Pre-PCR) to amplify genomic DNA of siphonapterids preserved for long periods in scientific collections
Article Snippet: Sequencing was performed in an automatic sequencer (3130 × l APPLIED BIOSYSTEMS). .. The sequences produced were analyzed using the CodonCode Aligner software (Phred algorithm) for the analysis of sequencing quality. .. Additionally, the samples obtained were submitted to the BLASTn tool from the National Center of Biotechnology Information (NCBI) to evaluate sequence similarity.

Sequencing:

Article Title: Use of Multiple Displacement Amplification as Pre-polymerase Chain Reaction (Pre-PCR) to amplify genomic DNA of siphonapterids preserved for long periods in scientific collections
Article Snippet: Sequencing was performed in an automatic sequencer (3130 × l APPLIED BIOSYSTEMS). .. The sequences produced were analyzed using the CodonCode Aligner software (Phred algorithm) for the analysis of sequencing quality. .. Additionally, the samples obtained were submitted to the BLASTn tool from the National Center of Biotechnology Information (NCBI) to evaluate sequence similarity.



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